PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 268aa    MW: 29313.4 Da    PI: 4.914
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC57.92.2e-186861898
                NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                         ++++P arikki++ad+dv +i+  +Pvl+ska elf+ +l   ++  + ++  +t+    ++ +v+r  ifdfl ++v +
  Kaladp0008s0900.1.p  6 DTRFPAARIKKIMQADDDVGKIAMAVPVLVSKALELFLQDLCDHTYGITVQTGAKTVSSVHLKHCVQRYSIFDFLSEVVNK 86
                         5789************************************************************************99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-24372IPR009072Histone-fold
SuperFamilySSF471138.75E-19488IPR009072Histone-fold
PfamPF008083.4E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DDDVGKIAMA VPVLVSKALE LFLQDLCDHT YGITVQTGAK  60
TVSSVHLKHC VQRYSIFDFL SEVVNKVPDY SHSGTSGEVR TLSRRRKAAG DELTDSDEDS  120
KRSRLPEAGH AASGGRGRGR GRGRGRGRIG RVAEPDHNQQ DIEPESAFDA TQAADNKDRD  180
LPSDLTEEAD GLTNPAVGKF DLNAEIKENK STPASEMPDI LSEHPAIQQE KFPGWSLSEI  240
DRIGINPLQL GSTNNTLDDE DYDEEDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A6e-21272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137146RGRGRGRGRG
2137147RGRGRGRGRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432367.13e-82hypothetical protein CICLE_v10002081mg
TrEMBLV4SXS03e-82V4SXS0_9R
STRINGGLYMA06G46850.19e-70(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-63nuclear factor Y, subunit C11